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Phenology: Reading nature’s seasonal calendar

Narrow leaf milkweed, asclepias fascicularis
Narrow leaf milkweed (asclepias fascicularis) goes dormant in the winter after making  seed pods.  It will return along with the Monarch butterflies  in the Spring. Photo:  Alice Cason

Phenology is the study of seasonal changes in plants and animals from year to year—such as when flowers bloom, birds nest, or insects emerge. Derived from the Greek word phaino, meaning “to show” or “to appear,” phenology helps us observe and understand how the natural world responds to climate and environmental changes over time.

Gardeners, farmers, naturalists, and scientists have long relied on phenology to guide decision-making. Indigenous communities and early agricultural societies based their planting and harvesting cycles on the appearance of specific plants and the migration of animals.

Phenology is all about timing. For gardeners and farmers, seasonal changes signal the best times to plant, prune, fertilize, and harvest. Shifts in temperature—warmer or cooler—can move these events weeks earlier or later on the calendar. Phenology also plays a critical role in pest and disease management. By tracking seasonal patterns, gardeners can better time interventions such as applying beneficial nematodes or setting pheromone traps for wasps.

California fuchsia (epilobium canum)
California fuchsia (epilobium canum) is a low growing shrub that attracts hummingbirds in the fall with bright red  tube shaped flowers. Photo: Alice Cason

These seasonal patterns are especially vital for pollinators. When the timing is right, pollinators arrive just as the plants they rely on for nectar and pollen are blooming. But when that timing is off, the results can be harmful. For example, if native bees emerge before their host plants bloom, their survival is at risk. Similarly, if native milkweed doesn’t go dormant in time to prompt monarch butterflies to migrate to overwintering sites, the monarchs may be endangered.

Applying Phenology in the Garden:

In California’s Mediterranean climate, fall is the ideal time to plant native plants, trees, and shrubs. Cooler temperatures reduce transplant shock, and plants benefit from the end-of-autumn storms and the full winter rainy season. This allows roots to grow deeply before summer droughts arrive, making plants more resilient and drought-tolerant.

When you see the signs of fall: 

  • Adjust irrigation to conserve water: Reduce watering as the days shorten,  temperatures cool and rain returns.
  • Collect and divide: Fall is a great time to collect seeds and divide perennials you’d like to propagate or relocate.
  • Leave the leaves: Avoid blowing, shredding, or raking fallen leaves. They provide habitat for beneficial insects that feed birds and pollinate your garden. Leaves also suppress weeds, add mulch, and enrich the soil. Leave acorns under oaks for birds and squirrels.
  • Plant annual wildflowers: After the first rains, plant California poppies (Eschscholzia californica). These wildflowers are monitored by the California Phenology Project at Golden Gate National Recreation Area.
  • Sow cover crops: In vegetable beds, sow fava beans, peas, mustard, vetch, or a mix of cover crop seeds. These plants enrich the soil for the next growing season. Water them until consistent rainfall begins.
  • Plant bare-root trees and shrubs: These soil-free plants are economical and establish strong root systems when planted in the fall. Soak roots before planting and dig wide holes to accommodate healthy growth.
  • Add spring bulbs: Plant bulbs point side up, and root side down about three times as deep as their width Do not amend the soil. Choose a variety for staggered blooming and vibrant spring color. There are several California natives like  Calochortus luteus (Mariposa lily) and Dichelostemma congestum ookow/Snake Lily that bloom in the spring and require no summer water. 
Liquidamber styraciflua tree
Liquidamber styraciflua trees (Sweet gum) and Cotinus Pink Champagne (smoke bush) mark the fall equinox with bright colors before the leaves drop. Photo: Alice Cason

Phenology reconnects us with the rhythms of the earth and how they are changing. By observing signals in your garden gardenly like the bloom of a certain flower- you can make more informed gardening decisions for an Earth-Friendly Garden. 

A wealth of data is available through the USA National Phenology Network, which invites volunteers to submit seasonal observations of local plants and animals. In California, citizen scientists can also contribute to the California Phenology Project and I Naturalist, (a part of the California Academy of Sciences), helping to build vital ecological knowledge and support climate research across the globe.

By Alice Cason, October 18, 2025